Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs78296728 chr11:68136168 G/A 0.000273 171 24.7 27.6 19.87 KM Plot
PCPG rs78313003 chr7:158664253 G/A 0 177 25.53 20.37 3.17 KM Plot
PCPG rs78318046 chr5:50296668 T/G 4.47E-7 171 24.77 34.37 13.5 KM Plot
PCPG rs78331410 chr16:89917775 C/T 0.000185 172 25.87 23.37 36.37 KM Plot
PCPG rs78336208 chr16:89939852 C/CT 0.000196 174 25.87 20.2 36.37 KM Plot
PCPG rs7835199 chr8:121390808 G/A 5.09E-6 176 26.88 25 19.87 KM Plot
PCPG rs78357351 chr2:176125689 G/A 0.00015 174 25.4 28.3 6.62 KM Plot
PCPG rs7839548 chr8:121502498 A/T 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs78418468 chr20:6028033 G/C 0 177 25.47 23.08 2.93 KM Plot
PCPG rs78435976 chr7:33727613 G/A 1.24E-7 176 25.4 25.43 19.87 KM Plot
PCPG rs78438678 chr20:10634675 C/T 0.000208 172 24.37 34.83 14.28 KM Plot
PCPG rs78442926 chr2:6747973 T/G 2.53E-5 177 25.87 24.52 23.6 KM Plot
PCPG rs78448931 chr16:89847803 T/C 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs78460409 chr2:118528251 G/A 1.53E-5 178 25 30.93 11.65 KM Plot
PCPG rs78472113 chr2:176209474 T/A 0.000124 177 25.28 28.47 6.62 KM Plot